What I'm really trying to get at here is, realistically, what kind of repercussions am I looking at if I do say something?

Would this be part of my "file" with the agency I applied to? Would I probably be labeled a malcontent if not passing and be blacklisted from other government jobs?

If he didn't know he was doing it and I said something to my app coordinator, then my career is over before it even began for absolutely no reason whatsoever.